When users have .md agent files in ~/.claude/agents/ with the same names
as builtin agents (e.g. sisyphus.md, hephaestus.md, atlas.md),
loadAgentsFromDir() hardcodes mode: "subagent" for all loaded agents.
Because the config assembly spreads userAgents after builtinAgents:
config.agent = {
...builtinAgents, // sisyphus: mode="primary"
...userAgents, // sisyphus: mode="subagent" ← overrides
}
this causes all primary agents to become subagents. The TUI filters out
subagents, so only non-plugin agents (like "docs") appear in the agent
selector.
Fix:
- Filter out user/project agents that share names with builtin agents
before spreading into config.agent (both sisyphus-enabled and fallback
branches)
- Respect frontmatter `mode` field in .md agent files instead of
hardcoding "subagent"
- Add `mode` to AgentFrontmatter type
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Extends the process.cwd() fix to cover all project-level loaders. In the desktop app, process.cwd() points to the app installation directory instead of the project directory, causing project-level agents, commands, and slash commands to not be discovered. Each function now accepts an optional directory parameter (defaulting to process.cwd() for backward compatibility) and callers pass ctx.directory from the plugin context.
Fixes#255
- Add getClaudeConfigDir() utility function that respects CLAUDE_CONFIG_DIR env var
- Update all hardcoded ~/.claude paths to use the new utility
- Add comprehensive tests for getClaudeConfigDir()
- Maintain backward compatibility with default ~/.claude when env var is not set
Files updated:
- src/shared/claude-config-dir.ts (new utility)
- src/shared/claude-config-dir.test.ts (tests)
- src/hooks/claude-code-hooks/config.ts
- src/hooks/claude-code-hooks/todo.ts
- src/hooks/claude-code-hooks/transcript.ts
- src/features/claude-code-command-loader/loader.ts
- src/features/claude-code-agent-loader/loader.ts
- src/features/claude-code-skill-loader/loader.ts
- src/features/claude-code-mcp-loader/loader.ts
- src/tools/session-manager/constants.ts
- src/tools/slashcommand/tools.ts
Co-authored-by: sisyphus-dev-ai <sisyphus-dev-ai@users.noreply.github.com>
