Bump AST tooling and Bun types in root manifest

Ultraworked with [Sisyphus](https://github.com/code-yeongyu/oh-my-openagent)

Co-authored-by: Sisyphus <clio-agent@sisyphuslabs.ai>

package.json

@@ -52,8 +52,8 @@
   },
   "homepage": "https://github.com/code-yeongyu/oh-my-openagent#readme",
   "dependencies": {
-    "@ast-grep/cli": "^0.40.0",
-    "@ast-grep/napi": "^0.40.0",
+    "@ast-grep/cli": "^0.41.1",
+    "@ast-grep/napi": "^0.41.1",
     "@clack/prompts": "^0.11.0",
     "@code-yeongyu/comment-checker": "^0.7.0",
     "@modelcontextprotocol/sdk": "^1.25.2",
@@ -72,7 +72,7 @@
   "devDependencies": {
     "@types/js-yaml": "^4.0.9",
     "@types/picomatch": "^3.0.2",
-    "bun-types": "1.3.6",
+    "bun-types": "1.3.10",
     "typescript": "^5.7.3"
   },
   "optionalDependencies": {